Detailed information of SNP:
|
SNP ID:
sf0906680211(Gbrowse)
Chromosome: chr09 Position: 6680211 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 86.36% | 13.64% |
| All Indica | 798 | 89.60% | 10.40% |
| All Japonica | 494 | 79.35% | 20.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 333 | 79.28% | 20.72% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906680211 | C->T | INTERGENIC | None |