Detailed information of SNP:
|
SNP ID:
sf0906729370(Gbrowse)
Chromosome: chr09 Position: 6729370 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 94.10% | 5.90% |
| All Indica | 794 | 99.62% | 0.38% |
| All Japonica | 458 | 85.15% | 14.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 99.05% | 0.95% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 328 | 91.77% | 8.23% |
| Tropical Japonica | 63 | 50.79% | 49.21% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906729370 | G->A | LOC_Os09g11950(LOC_Os09g11950.1) | Non-Synonymous SNP |