Detailed information of SNP:
|
SNP ID:
sf0906745271(Gbrowse)
Chromosome: chr09 Position: 6745271 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 85.88% | 14.12% |
| All Indica | 797 | 99.00% | 1.00% |
| All Japonica | 483 | 61.70% | 38.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 329 | 60.18% | 39.82% |
| Tropical Japonica | 87 | 55.17% | 44.83% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906745271 | T->C | LOC_Os09g11970(LOC_Os09g11970.1) | Synonymous |