Detailed information of SNP:
|
SNP ID:
sf0906764331(Gbrowse)
Chromosome: chr09 Position: 6764331 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 80.47% | 19.53% |
| All Indica | 799 | 80.48% | 19.52% |
| All Japonica | 497 | 88.73% | 11.27% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906764331 | T->C | INTERGENIC | None |