Detailed information of SNP:
|
SNP ID:
sf0906774937(Gbrowse)
Chromosome: chr09 Position: 6774937 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 54.05% | 45.95% |
| All Indica | 799 | 33.54% | 66.46% |
| All Japonica | 497 | 88.73% | 11.27% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 29.33% | 70.67% |
| Indica II | 213 | 39.44% | 60.56% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906774937 | G->C | INTERGENIC | None |