Detailed information of SNP:
|
SNP ID:
sf0906781983(Gbrowse)
Chromosome: chr09 Position: 6781983 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 94.97% | 5.03% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 490 | 87.55% | 12.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 95.80% | 4.20% |
| Tropical Japonica | 92 | 55.43% | 44.57% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906781983 | G->A | INTERGENIC | None |