Detailed information of SNP:
|
SNP ID:
sf0906783569(Gbrowse)
Chromosome: chr09 Position: 6783569 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 96.25% | 3.75% |
| All Indica | 796 | 99.75% | 0.25% |
| All Japonica | 444 | 89.19% | 10.81% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 305 | 88.52% | 11.48% |
| Tropical Japonica | 78 | 88.46% | 11.54% |
| Japonica Intermediate | 61 | 93.44% | 6.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906783569 | G->T | LOC_Os09g12040(LOC_Os09g12040.1) | Non-Synonymous SNP |