Detailed information of SNP:
|
SNP ID:
sf0906784691(Gbrowse)
Chromosome: chr09 Position: 6784691 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 76.64% | 23.36% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 495 | 40.81% | 59.19% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 45.37% | 54.63% |
| Tropical Japonica | 92 | 17.39% | 82.61% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906784691 | T->C | LOC_Os09g12040(LOC_Os09g12040.1) | INTRON |