Detailed information of SNP:
|
SNP ID:
sf0906792623(Gbrowse)
Chromosome: chr09 Position: 6792623 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 90.55% | 9.45% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 437 | 72.08% | 27.92% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 292 | 63.70% | 36.30% |
| Tropical Japonica | 88 | 89.77% | 10.23% |
| Japonica Intermediate | 57 | 87.72% | 12.28% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906792623 | C->T | INTERGENIC | None |