Detailed information of SNP:
|
SNP ID:
sf0906801658(Gbrowse)
Chromosome: chr09 Position: 6801658 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 64.81% | 35.19% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 497 | 12.47% | 87.53% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906801658 | A->G | INTERGENIC | None |