Detailed information of SNP:
|
SNP ID:
sf0906813901(Gbrowse)
Chromosome: chr09 Position: 6813901 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1308 | 71.41% | 28.59% |
| All Indica | 691 | 47.03% | 52.97% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 316 | 50.95% | 49.05% |
| Indica II | 190 | 37.89% | 62.11% |
| Indica Intermediate | 185 | 49.73% | 50.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906813901 | C->T | LOC_Os09g12070(LOC_Os09g12070.1) | Synonymous |