Detailed information of SNP:
|
SNP ID:
sf0906840924(Gbrowse)
Chromosome: chr09 Position: 6840924 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1356 | 58.04% | 41.96% |
| All Indica | 740 | 32.30% | 67.70% |
| All Japonica | 495 | 89.09% | 10.91% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 350 | 29.71% | 70.29% |
| Indica II | 190 | 35.26% | 64.74% |
| Indica Intermediate | 200 | 34.00% | 66.00% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 66 | 68.18% | 31.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906840924 | A->T | LOC_Os09g12110(LOC_Os09g12110.1) | INTRON |