Detailed information of SNP:
|
SNP ID:
sf0906858250(Gbrowse)
Chromosome: chr09 Position: 6858250 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1326 | 98.27% | 1.73% |
| All Indica | 716 | 97.77% | 2.23% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 337 | 97.33% | 2.67% |
| Indica II | 182 | 99.45% | 0.55% |
| Indica Intermediate | 197 | 96.95% | 3.05% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 8 | 75.00% | 25.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906858250 | G->A | LOC_Os09g12130(LOC_Os09g12130.1) | Non-Synonymous SNP |