Detailed information of SNP:
|
SNP ID:
sf0906864440(Gbrowse)
Chromosome: chr09 Position: 6864440 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 91.22% | 8.78% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 491 | 76.78% | 23.22% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 329 | 77.51% | 22.49% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906864440 | G->A | INTERGENIC | None |