Detailed information of SNP:
|
SNP ID:
sf0906883682(Gbrowse)
Chromosome: chr09 Position: 6883682 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 92.66% | 7.34% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 495 | 86.67% | 13.33% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 84.68% | 15.32% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906883682 | G->A | LOC_Os09g12170(LOC_Os09g12170.1) | SNPs that introduce stop codons |