Detailed information of SNP:
|
SNP ID:
sf0906898491(Gbrowse)
Chromosome: chr09 Position: 6898491 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 92.18% | 7.82% |
| All Indica | 799 | 90.36% | 9.64% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906898491 | A->G | INTERGENIC | None |