Detailed information of SNP:
|
SNP ID:
sf0906909944(Gbrowse)
Chromosome: chr09 Position: 6909944 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 89.90% | 10.10% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 494 | 75.10% | 24.90% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 72.46% | 27.54% |
| Tropical Japonica | 92 | 88.04% | 11.96% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906909944 | G->T | INTERGENIC | None |