Detailed information of SNP:
|
SNP ID:
sf0906919907(Gbrowse)
Chromosome: chr09 Position: 6919907 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 88.54% | 11.46% |
| All Indica | 738 | 99.05% | 0.95% |
| All Japonica | 493 | 71.40% | 28.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 356 | 98.60% | 1.40% |
| Indica II | 202 | 99.50% | 0.50% |
| Indica Intermediate | 180 | 99.44% | 0.56% |
| Temperate Japonica | 332 | 60.84% | 39.16% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906919907 | A->G | INTERGENIC | None |