Detailed information of SNP:
|
SNP ID:
sf0906965618(Gbrowse)
Chromosome: chr09 Position: 6965618 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 97.98% | 2.02% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 416 | 93.99% | 6.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 278 | 91.73% | 8.27% |
| Tropical Japonica | 78 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 96.67% | 3.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906965618 | G->T | INTERGENIC | None |