Detailed information of SNP:
|
SNP ID:
sf0907028568(Gbrowse)
Chromosome: chr09 Position: 7028568 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 68.75% | 31.25% |
| All Indica | 786 | 95.42% | 4.58% |
| All Japonica | 489 | 22.09% | 77.91% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 364 | 93.96% | 6.04% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 331 | 9.97% | 90.03% |
| Tropical Japonica | 90 | 40.00% | 60.00% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907028568 | T->C | LOC_Os09g12330(LOC_Os09g12330.1) | Non-Synonymous SNP |