Detailed information of SNP:
|
SNP ID:
sf0907045341(Gbrowse)
Chromosome: chr09 Position: 7045341 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 50.14% | 49.86% |
| All Indica | 798 | 85.46% | 14.54% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 82.35% | 17.65% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907045341 | C->T | LOC_Os09g12350(LOC_Os09g12350.1) | INTRON |