Detailed information of SNP:
|
SNP ID:
sf0907047512(Gbrowse)
Chromosome: chr09 Position: 7047512 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1377 | 61.22% | 38.78% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 455 | 6.59% | 93.41% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 301 | 6.98% | 93.02% |
| Tropical Japonica | 88 | 1.14% | 98.86% |
| Japonica Intermediate | 66 | 12.12% | 87.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907047512 | C->T | LOC_Os09g12350(LOC_Os09g12350.1) | INTRON |