Detailed information of SNP:
|
SNP ID:
sf0907070077(Gbrowse)
Chromosome: chr09 Position: 7070077 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 58.70% | 41.30% |
| All Indica | 779 | 91.40% | 8.60% |
| All Japonica | 479 | 2.30% | 97.70% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 360 | 89.44% | 10.56% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 328 | 0.91% | 99.09% |
| Tropical Japonica | 91 | 3.30% | 96.70% |
| Japonica Intermediate | 60 | 8.33% | 91.67% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907070077 | A->G | LOC_Os09g12370(LOC_Os09g12370.1) | INTRON |