Detailed information of SNP:
|
SNP ID:
sf0907092222(Gbrowse)
Chromosome: chr09 Position: 7092222 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 63.84% | 36.16% |
| All Indica | 798 | 97.37% | 2.63% |
| All Japonica | 495 | 7.27% | 92.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 66 | 19.70% | 80.30% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907092222 | T->G | INTERGENIC | None |