Detailed information of SNP:
|
SNP ID:
sf0907105741(Gbrowse)
Chromosome: chr09 Position: 7105741 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1347 | 96.51% | 3.49% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 428 | 89.02% | 10.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 282 | 84.40% | 15.60% |
| Tropical Japonica | 83 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907105741 | C->T | LOC_Os09g12420(LOC_Os09g12420.1) | INTRON |