Detailed information of SNP:
|
SNP ID:
sf0907106754(Gbrowse)
Chromosome: chr09 Position: 7106754 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 83.36% | 16.64% |
| All Indica | 798 | 70.43% | 29.57% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 51.73% | 48.27% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907106754 | T->C | LOC_Os09g12420(LOC_Os09g12420.1) | INTRON |