Detailed information of SNP:
|
SNP ID:
sf0907126691(Gbrowse)
Chromosome: chr09 Position: 7126691 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 78.74% | 21.26% |
| All Indica | 799 | 69.46% | 30.54% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 375 | 51.73% | 48.27% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907126691 | C->T | LOC_Os09g12460(LOC_Os09g12460.1) | Non-Synonymous SNP |