Detailed information of SNP:
|
SNP ID:
sf0907137440(Gbrowse)
Chromosome: chr09 Position: 7137440 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 75.73% | 24.27% |
| All Indica | 795 | 68.30% | 31.70% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 375 | 51.20% | 48.80% |
| Indica II | 210 | 87.14% | 12.86% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907137440 | A->G | LOC_Os09g12480(LOC_Os09g12480.1) | INTRON |