Detailed information of SNP:
|
SNP ID:
sf0907139746(Gbrowse)
Chromosome: chr09 Position: 7139746 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 71.88% | 28.12% |
| All Indica | 799 | 67.08% | 32.92% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 48.27% | 51.73% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 92.24% | 7.76% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907139746 | G->C | LOC_Os09g12480(LOC_Os09g12480.1) | Non-Synonymous SNP |