Detailed information of SNP:
|
SNP ID:
sf0907139771(Gbrowse)
Chromosome: chr09 Position: 7139771 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 93.67% | 6.33% |
| All Indica | 781 | 99.74% | 0.26% |
| All Japonica | 486 | 83.33% | 16.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 99.72% | 0.28% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 326 | 76.99% | 23.01% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907139771 | T->C | LOC_Os09g12480(LOC_Os09g12480.1) | Non-Synonymous SNP |