Detailed information of SNP:
|
SNP ID:
sf0907161669(Gbrowse)
Chromosome: chr09 Position: 7161669 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 52.22% | 47.78% |
| All Indica | 799 | 23.40% | 76.60% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 21.87% | 78.13% |
| Indica II | 213 | 20.66% | 79.34% |
| Indica Intermediate | 211 | 28.91% | 71.09% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907161669 | G->A | INTERGENIC | None |