Detailed information of SNP:
|
SNP ID:
sf0907164546(Gbrowse)
Chromosome: chr09 Position: 7164546 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 62.12% | 37.88% |
| All Indica | 798 | 97.12% | 2.88% |
| All Japonica | 495 | 0.81% | 99.19% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 333 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907164546 | A->G | INTERGENIC | None |