Detailed information of SNP:
|
SNP ID:
sf0907174535(Gbrowse)
Chromosome: chr09 Position: 7174535 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 51.69% | 48.31% |
| All Indica | 783 | 80.97% | 19.03% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 58 | 89.66% | 10.34% |
| Indica I | 366 | 79.51% | 20.49% |
| Indica II | 210 | 86.67% | 13.33% |
| Indica Intermediate | 207 | 77.78% | 22.22% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907174535 | A->G | INTERGENIC | None |