Detailed information of SNP:
|
SNP ID:
sf0907174556(Gbrowse)
Chromosome: chr09 Position: 7174556 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1326 | 72.10% | 27.90% |
| All Indica | 738 | 89.84% | 10.16% |
| All Japonica | 479 | 42.38% | 57.62% |
| Aus | 56 | 92.86% | 7.14% |
| Indica I | 342 | 88.60% | 11.40% |
| Indica II | 201 | 93.53% | 6.47% |
| Indica Intermediate | 195 | 88.21% | 11.79% |
| Temperate Japonica | 324 | 45.99% | 54.01% |
| Tropical Japonica | 87 | 14.94% | 85.06% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907174556 | A->G | INTERGENIC | None |