Detailed information of SNP:
|
SNP ID:
sf0907174571(Gbrowse)
Chromosome: chr09 Position: 7174571 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 57.17% | 42.83% |
| All Indica | 759 | 68.51% | 31.49% |
| All Japonica | 496 | 35.89% | 64.11% |
| Aus | 56 | 85.71% | 14.29% |
| Indica I | 359 | 66.85% | 33.15% |
| Indica II | 204 | 75.00% | 25.00% |
| Indica Intermediate | 196 | 64.80% | 35.20% |
| Temperate Japonica | 335 | 37.01% | 62.99% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907174571 | A->G | INTERGENIC | None |