Detailed information of SNP:
|
SNP ID:
sf0907178681(Gbrowse)
Chromosome: chr09 Position: 7178681 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 92.16% | 7.84% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 469 | 77.19% | 22.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 315 | 68.57% | 31.43% |
| Tropical Japonica | 88 | 98.86% | 1.14% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907178681 | T->G | INTERGENIC | None |