Detailed information of SNP:
|
SNP ID:
sf0907267757(Gbrowse)
Chromosome: chr09 Position: 7267757 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1321 | 94.78% | 5.22% |
| All Indica | 703 | 90.61% | 9.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 331 | 93.35% | 6.65% |
| Indica II | 185 | 85.95% | 14.05% |
| Indica Intermediate | 187 | 90.37% | 9.63% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907267757 | C->T | LOC_Os09g12700(LOC_Os09g12700.1) | INTRON |