Detailed information of SNP:



SNP ID: sf0907277736(Gbrowse)

Chromosome: chr09

Position: 7277736
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 65.16% 34.84%
All Indica799 97.00% 3.00%
All Japonica497 10.06% 89.94%
Aus67 97.01% 2.99%
Indica I375 98.93% 1.07%
Indica II213 95.31% 4.69%
Indica Intermediate211 95.26% 4.74%
Temperate Japonica335 13.13% 86.87%
Tropical Japonica94 2.13% 97.87%
Japonica Intermediate68 5.88% 94.12%
Group VI/Aromatic14 71.43% 28.57%
Intermediate41 58.54% 41.46%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0907277736 T->C LOC_Os09g12720(LOC_Os09g12720.1) Synonymous
sf0907277736 T->C LOC_Os09g12720(LOC_Os09g12720.2) Synonymous