Detailed information of SNP:
|
SNP ID:
sf0907277736(Gbrowse)
Chromosome: chr09 Position: 7277736 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.16% | 34.84% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 10.06% | 89.94% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 13.13% | 86.87% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907277736 | T->C | LOC_Os09g12720(LOC_Os09g12720.1) | Synonymous |
| sf0907277736 | T->C | LOC_Os09g12720(LOC_Os09g12720.2) | Synonymous |