Detailed information of SNP:
|
SNP ID:
sf0907292804(Gbrowse)
Chromosome: chr09 Position: 7292804 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 68.19% | 31.81% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 497 | 17.10% | 82.90% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 23.28% | 76.72% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907292804 | A->G | LOC_Os09g12730(LOC_Os09g12730.2) | INTRON |
| sf0907292804 | A->G | LOC_Os09g12730(LOC_Os09g12730.1) | INTRON |