Detailed information of SNP:
|
SNP ID:
sf0907314834(Gbrowse)
Chromosome: chr09 Position: 7314834 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.27% | 40.73% |
| All Indica | 799 | 34.54% | 65.46% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 14.13% | 85.87% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 32.23% | 67.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907314834 | T->C | INTERGENIC | None |