Detailed information of SNP:
|
SNP ID:
sf0907412545(Gbrowse)
Chromosome: chr09 Position: 7412545 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 53.57% | 46.43% |
| All Indica | 796 | 72.86% | 27.14% |
| All Japonica | 496 | 18.75% | 81.25% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 212 | 35.85% | 64.15% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 334 | 10.18% | 89.82% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907412545 | T->G | INTERGENIC | None |