Detailed information of SNP:
|
SNP ID:
sf0907429352(Gbrowse)
Chromosome: chr09 Position: 7429352 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.69% | 42.31% |
| All Indica | 799 | 41.30% | 58.70% |
| All Japonica | 497 | 79.07% | 20.93% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 30.67% | 69.33% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 29.38% | 70.62% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907429352 | C->A | INTERGENIC | None |