Detailed information of SNP:
|
SNP ID:
sf0907432822(Gbrowse)
Chromosome: chr09 Position: 7432822 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 77.94% | 22.06% |
| All Indica | 795 | 62.77% | 37.23% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 372 | 72.85% | 27.15% |
| Indica II | 212 | 33.96% | 66.04% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907432822 | A->G | INTERGENIC | None |