Detailed information of SNP:
|
SNP ID:
sf0907440318(Gbrowse)
Chromosome: chr09 Position: 7440318 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 76.96% | 23.04% |
| All Indica | 799 | 66.33% | 33.67% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 79.20% | 20.80% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907440318 | T->G | INTERGENIC | None |