Detailed information of SNP:
|
SNP ID:
sf0907447324(Gbrowse)
Chromosome: chr09 Position: 7447324 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.71% | 49.29% |
| All Indica | 797 | 70.64% | 29.36% |
| All Japonica | 497 | 18.31% | 81.69% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 212 | 31.13% | 68.87% |
| Indica Intermediate | 210 | 77.62% | 22.38% |
| Temperate Japonica | 335 | 9.55% | 90.45% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907447324 | C->T | INTERGENIC | None |