Detailed information of SNP:
|
SNP ID:
sf0907479791(Gbrowse)
Chromosome: chr09 Position: 7479791 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 71.16% | 28.84% |
| All Indica | 798 | 60.28% | 39.72% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 70.13% | 29.87% |
| Indica II | 213 | 30.52% | 69.48% |
| Indica Intermediate | 210 | 72.86% | 27.14% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907479791 | T->C | LOC_Os09g12970(LOC_Os09g12970.1) | INTRON |