Detailed information of SNP:
|
SNP ID:
sf0907493875(Gbrowse)
Chromosome: chr09 Position: 7493875 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 56.80% | 43.20% |
| All Indica | 795 | 40.25% | 59.75% |
| All Japonica | 494 | 80.16% | 19.84% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 29.41% | 70.59% |
| Indica II | 211 | 70.62% | 29.38% |
| Indica Intermediate | 210 | 29.05% | 70.95% |
| Temperate Japonica | 334 | 88.92% | 11.08% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 66 | 45.45% | 54.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907493875 | T->C | LOC_Os09g12990(LOC_Os09g12990.1) | Non-Synonymous SNP |