Detailed information of SNP:
|
SNP ID:
sf0907497479(Gbrowse)
Chromosome: chr09 Position: 7497479 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.49% | 40.51% |
| All Indica | 798 | 42.73% | 57.27% |
| All Japonica | 497 | 82.29% | 17.71% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 31.55% | 68.45% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 30.33% | 69.67% |
| Temperate Japonica | 335 | 90.75% | 9.25% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907497479 | C->T | INTERGENIC | None |