Detailed information of SNP:
|
SNP ID:
sf0907511890(Gbrowse)
Chromosome: chr09 Position: 7511890 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 61.86% | 38.14% |
| All Indica | 796 | 71.48% | 28.52% |
| All Japonica | 497 | 44.67% | 55.33% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 90.08% | 9.92% |
| Indica II | 212 | 31.60% | 68.40% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 46.87% | 53.13% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907511890 | A->T | LOC_Os09g13030(LOC_Os09g13030.1) | SNPs that disrupt stop codons |