Detailed information of SNP:
|
SNP ID:
sf0907514920(Gbrowse)
Chromosome: chr09 Position: 7514920 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 50.36% | 49.64% |
| All Indica | 792 | 68.69% | 31.31% |
| All Japonica | 493 | 17.24% | 82.76% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 87.10% | 12.90% |
| Indica II | 211 | 30.33% | 69.67% |
| Indica Intermediate | 209 | 74.64% | 25.36% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 90 | 20.00% | 80.00% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0907514920 | C->T | INTERGENIC | None |